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height/weight/head circumference percentiles

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Last Post by jjordet 12 years ago

2 Posts

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BrandonFluitt

(@brandonfluitt)

Posts: 22

Eminent Member

Topic starter

We have a provider who is requesting the percentiles for height/weight/head circumference come into the text translation of his pediatric visits. Has anyone happened to have tackled this coding yet?

Posted : March 26, 2013 4:18 am

jjordet

(@jjordet)

Posts: 545

Honorable Member

{fn CalcPercentiles()

{

calculate_height_percentile()

calculate_weight_percentile()

calculate_headcirc_percentile()

calculate_bmi_percentile()

}

{fn CALCULATE_HEIGHT_PERCENTILE()

{

local htP

htP = str(GetHeightPercentile(GetAgeInMonths(PATIENT.DATEOFBIRTH), OBSNOW("HEIGHT (CM)")))

OBSNOW("HEIGHT %TILE", htP)

}

{fn GetHeightPercentile(ageInMonths, htCm)

{

local lmsArr

local p = ""

if ageInMonths<240 and size(htCm)<>0 then

lmsArr = GetLms("height_age", ageInMonths, TRUE, 0)

if size(lmsArr)<>0 then

p = GetPercentile(GetZScore(htCm, lmsArr[2], lmsArr[3], lmsArr[4]))

endif

return p

}

{fn CALCULATE_WEIGHT_PERCENTILE()

{

local wtP

wtP=str(GetWeightPercentile(GetAgeInMonths(PATIENT.DATEOFBIRTH), OBSNOW("WEIGHT (KG)")))

OBSNOW("WEIGHT %TILE", wtP)

}

{fn GetWeightPercentile(ageInMonths, wtKg)

{

local lmsArr

local p = ""

if size(wtKg)<>0 then

lmsArr = GetLms("weight_age", ageInMonths, TRUE, 0)

if size(lmsArr)<>0 then

p = GetPercentile(GetZScore(wtKg, lmsArr[2], lmsArr[3], lmsArr[4]))

endif

return p

}

{fn CALCULATE_HEADCIRC_PERCENTILE()

{

local hcP

hcP = str(GetHeadCircPercentile(GetAgeInMonths(PATIENT.DATEOFBIRTH), OBSNOW("HEADCIRC(CM)")))

OBSNOW("HC %tile", hcP)

}

{fn GetHeadCircPercentile(ageInMonths, hcCm)

{

local lmsArr

local p = ""

if ageInMonths<=36 and size(hcCm)<>0 then

lmsArr = GetLms("head_circ_36", ageInMonths, FALSE, 0)

if size(lmsArr)<>0 then

p = GetPercentile(GetZScore(hcCm, lmsArr[2], lmsArr[3], lmsArr[4]))

endif

return p

}

{fn Calculate_BMI_Percentile()

{

local bmiP

local wtForHtP

local dob

local ageInMonths

local bmi

local htCm

local wtKg

htCm = OBSNOW("HEIGHT (CM)")

wtKg = OBSNOW("WEIGHT (KG)")

bmi = OBSNOW("BMI")

dob = PATIENT.DATEOFBIRTH

ageInMonths = GetAgeInMonths(dob)

bmiP = GetBMIPercentile(ageInMonths, bmi)

bmiP = str(bmiP)

OBSNOW("bmi%ile", bmiP)

wtForHtP = GetWeightForStaturePercentile(ageInMonths, wtKg, htCm)

wtForHtP = str(wtForHtP)

OBSNOW("wt lgth-ht%", wtForHtP)

}

{fn GetBMIPercentile(ageInMonths, bmi)

{

local lmsArr

local p = ""

local index = 0

if ageInMonths>=24 and ageInMonths<240 and size(bmi)<>0 then

if ageInMonths<60 then

index = 24

endif

lmsArr = GetLms("bmi_age", ageInMonths-index, TRUE, index)

if size(lmsArr)<>0 then

p = GetPercentile(GetZScore(bmi, lmsArr[2], lmsArr[3],lmsArr[4]))

endif

return p

}

{fn GetWeightForStaturePercentile(ageInMonths, wtKg, htCm)

{

local lmsArr

local p = ""

local indexVal

if ageInMonths<=60 and size(wtKg)<>0 and size(htCm)<>0 then

if ageInMonths<24 and htCm>45 and htCm<103 then

indexVal = htCm-45-0

lmsArr = GetLms("weight_length_infant", indexVal, FALSE, 45)

if size(lmsArr)<>0 then

p = GetPercentile(GetZScore(wtKg, lmsArr[2], lmsArr[3], lmsArr[4]))

endif

else

if ageInMonths>=24 and htCm>77 and htCm<121 then

indexVal = htCm-77-0

lmsArr = GetLms("weight_length_child", indexVal, FALSE, 77)

if size(lmsArr)<>0 then

p = GetPercentile(GetZScore(wtKg, lmsArr[2], lmsArr[3], lmsArr[4]))

endif

return p

}

{fn GetAgeInMonths(dob)

{

local ageArr

local ageInMos

ageArr = GetAgeArray(dob)

ageInMos = 12 * get(ageArr, 1) + 1 * get(ageArr, 2) + 1 / 31 * get(ageArr, 3)

return ageInMos

}

{fn GetAgeArray(dob)

{

local years

local months

local days

local today

local ageArr

today = str(DOCUMENT.CLINICALDATE)

dob = str(dob)

years = 0 + sub(today, 7, 4) - sub(dob, 7, 4)

months = 0 + sub(today, 1, 2) - sub(dob, 1, 2)

days = 0 + sub(today, 4, 2) - sub(dob, 4, 2)

if days<0 then

days = days + GetDaysInMonth(dob)

months = months - 1

endif

if months<0 then

months = months + 12

years = years - 1

endif

ageArr = array(years, months, days)

return ageArr

}

{fn GetDaysInMonth(date)

{

local day

local month

local year

local nextMo

date==str(date)

month = sub(date, 1, 2)

day = sub(date, 4, 2)

year = sub(date, 7, 4)

nextMo = ADDDATES(month + "/01/" + year, "0", "1", "0" )

nextMo = SUBTRACTDATES(str(nextMo), "0", "0", "1")

day = sub(str(nextMo), 4, 2)

day = 0 + day

return day

}

{fn GetLms(fileName, ageInMonths, addAgeToFileName, adjIndex)

{

local fileNameAge = 0

local rawLmsArr

local lmsArr

local index

local rawHi

local rawLo

if addAgeToFileName then

if ageInMonths<60 then

fileNameAge = 60

else

if ageInMonths<120 then

fileNameAge = 120

else

if ageInMonths<180 then

fileNameAge = 180

else

if ageInMonths<240 then

fileNameAge = 240

else

if ageInMonths>=240 then

return ""

endif

fileName = fileName + "_" + str(fileNameAge)

endif

lmsArr = GetRawLmsArray(fileName)

if size(lmsArr)==0 then

return ""

else

index = ageInMonths - fileNameAge + 1.5

if addAgeToFileName then

index = index + 60

endif

index = div(index, 1)

if size(lmsArr)<index then

return ""

else

rawLo = get(lmsArr,index)

if size(lmsArr)>index then

index = index + 1

endif

rawHi = get(lmsArr, index)

rawLo = getfield(rawLo, "|")

rawHi = getfield(rawHi, "|")

ageInMonths = ageInMonths + adjIndex

lmsArr = GetLMSArray(ageInMonths, rawLo, rawHi)

return lmsArr

endif

}

{fn GetLMSArray(ptAge, lmsArrLow, lmsArrHigh )

{

local ageLow

local ageHigh

local L

local M

local S

local LMSArr

local fractAbove

ageLow = 1 * lmsArrLow[4]

ageHigh = 1 * lmsArrHigh[4]

if (ageHigh-ageLow)==0 then

fractAbove = 1

else

fractAbove = (ptAge-ageLow) / (ageHigh-ageLow)

endif

L = 1 * lmsArrLow[1] + (1 * lmsArrHigh[1] - 1 * lmsArrLow[1]) * fractAbove

M = 1 * lmsArrLow[2] + (1 * lmsArrHigh[2] - 1 * lmsArrLow[2]) * fractAbove

S = 1 * lmsArrLow[3] + (1 * lmsArrHigh[3] - 1 * lmsArrLow[3]) * fractAbove

LMSArr = array(ptAge, L, M, S)

return LMSArr

}

{fn GetRawLmsArray(fileName)

{

local path

local file

local text = ""

local lmsArr = ""

path = GetGrowthChartLmsDataPath() + fileName

file = FILEOPEN(path, "r")

if file<>NULL then

text = FILEREAD(file)

FILECLOSE(file)

if size(text)<>0 then

lmsArr = getfield(text, ",")

endif

else

USEROK("Unable to open file '" + path + "'")

endif

return lmsArr

}

{fn GetGrowthChartLmsDataPath()

{

local path

local backslashes = "\\\"

local backslash = sub(backslashes, 2, 1)

path = DIR_EMR() + backslash + "clinical content" + backslash

+ "peds_growth_data" + backslash + PATIENT.SEX + backslash

return path

}

{fn GetZScore(val, lVal, mVal, sVal)

{

local z

z = val / mVal

if lVal==0 then

lVal = 0.000000001

endif

z = z ^ lVal

z = z - 1

z = z / (1 * lVal * 1 * sVal)

return z

}

{fn GetPercentile(z)

{

local p10

local p9

local p4

local p3

local p2

local p1

local p

local pp

p10 = 1 + (0.33267 * AbsValue(z))

p9 = 1 / p10

p4 = (0.4361836 * p9) - (0.1201676 * (p9 ^ 2)) + (0.937298 * (p9 ^ 3))

p1= 2 * 3.14159265

p3 = (AbsValue(z) ^ 2)

p2 = -1 * p3 / 2

pp = 1 / (p1 ^ 0.5) * (2.71828182845905 ^ p2) * p4

p = 1 - pp

if z>0 then

p = p * 100

else

p = 100 - p * 100

endif

p = div((p + 0.5), 1)

return p

}

{fn AbsValue(value)

{

if value < 0 then

return -1 * value

else

return value

endif

}

Posted : March 26, 2013 4:25 am

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